Cliniko and Stripe and Xero

I started using Stripe for taking online payments but found it a real hassle on the accounting side because Stripe take their fee at source so you cannot reconcile the invoice with Xero as the invoice is closed at £35 rather than £35- stripe fee.

Has anyone got an effective workaround? Would it be easier if stripe payments came through as open instead of closed?

At the moment the extra aggravation of sorting the accounting side is outweighing the ease of taking online payments.

Thanks in advance,